The Unconventional Serine Proteases
Numerous serine proteases exist that use other than the "canonical" triad. Some examples:
| Aspartyl Dipeptidase, S. tymphimurium (1fye) |
Sedolisin, Pseudomonas (1ga4) |
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| Ser120, His157, Glu192 |
Ser287, Glu80, Asp84 |
| Carboxypeptidase B, Streptomyces (3pte) |
Signal Peptidase I, E. coli (1b12) |
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| Ser62, Lys65, Tyr159 |
Ser90, Lys145 |
Since the role played by the serine is using the OH as a nucleophile, there is no reason why threonine could not serve just as well.
The proteasome in archaea and eukaryotes is a threonine protease:
- The proteasome forms a 20S structure of four seven-membered rings
- The two outer rings are homoheptamers
- The two inner rings are homoheptamers containing the catalytic sites
- In eukaryotes, the 20S unit associates with a 6S unit which uses ATP
- Open the gate at the end of the outer ring
- Unfold the target protein
- Translocate it into the degradation chamber
- The cap unit from any species works with the core unit from any other species
| Side View of the 20S Proteasome (1pma) |
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| End View, Closed |
End View, Open |
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| The 20S Plus Two 6S Caps |
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| One of the Catalytic Subunits |
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| Catalytic Residues: Thr1, Glu17, Lys33 |
This page last modified 1:51 PM on Monday March 14th, 2011.
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