Secondary Structure of Proteins - I

Using space-filling models, G. N. Ramachandran [Adv. Protein Chem., 1968, 23, 283 explored the sterically accessible conformation space of some simple peptides.

Structure f y
Fully extended 180 180
Antiparallel b-sheet -139 135
Parallel b-sheet -119 113
Right-handed a-helix -57 -47
Left-handed a-helix 60 60
310 helix -49 -26
p-helix -57 -70
Table from Fersht, Structure and Mechanism in Protein Science, p. 18

These ranges are not absolute, nor are the outlying territories "forbidden" in any sense.

The graph below is a Ramachandran plot for the enzyme chorismate mutase, prepared using VMD.

OK, now, what are a-helices and b-sheets? That's secondary structure.


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